Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 673
Gene Symbol: BRAF
BRAF
1.000 GeneticVariation disease BEFREE The activation of oncogenic mitogen-activated protein kinase cascade via mutations in BRAF is often observed in human melanomas. 31571292 2020
Entrez Id: 673
Gene Symbol: BRAF
BRAF
1.000 GeneticVariation disease BEFREE A 39-year-old white male was treated with vemurafenib, cobimetinib, and atezolizumab for a stage IV (T0, N3, M1) BRAF-V600E mutated malignant melanoma in the context of a clinical trial. 31157737 2020
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.800 PosttranslationalModification disease BEFREE Somatic oncogenic mutation of BRAF coupled with inactivation of PTEN constitute a frequent combination of genomic alterations driving the development of human melanoma. 31065107 2020
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.800 Biomarker disease BEFREE Compared with having a truncal melanoma, CDK4 (vs. noncarriers: lower extremities OR = 14.5, 95% confidence interval [CI] = 5.02-42.0, P < 0.001; upper extremities OR = 6.88, 95% CI = 2.37-19.9, P < 0.001; head and neck OR = 18.6, 95% CI = 4.04-85.2, P < 0.001) and CDKN2A (vs. noncarriers: lower extremities OR = 3.01, 95% CI = 1.56-5.82, P < 0.05; upper extremities OR = 1.91, 95% CI = 1.03-3.52, P < 0.05; head and neck OR = 5.40, 95% CI = 2.10-13.9, P < 0.001) carriers had higher odds of developing melanoma at all other sites. 31326397 2020
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.800 GeneticVariation disease BEFREE This study investigated whether genetic counseling and test reporting for the highly penetrant CDKN2A melanoma predisposition gene promoted decreases in sun exposure. 31371819 2020
Entrez Id: 4286
Gene Symbol: MITF
MITF
0.700 Biomarker disease BEFREE Our results reveal that MITF is a lineage-specific regulator of metabolic reprogramming, whereby fatty acid composition is a driver of melanoma phenotype switching, and highlight that cell phenotype dictates the response to drugs targeting lipid metabolism. 31733993 2020
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.700 Biomarker disease BEFREE Paradoxical Role for Wild-Type p53 in Driving Therapy Resistance in Melanoma. 31836388 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 GeneticVariation disease BEFREE Combined therapeutic targeted strategies are awaited in NRAS-mutated and KIT-altered melanoma and could provide additional benefit. 31833955 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 GeneticVariation disease BEFREE Similar results were obtained for TRB CDR3s and NRAS mutants in melanoma. 31740784 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 Biomarker disease BEFREE Intra-patient heterogeneity was detected in 13.3% of patients for both BRAF and NRAS genes and was not associated with clinico-pathological characteristics of melanomas or metastases. 31774543 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 GeneticVariation disease BEFREE Accordingly, in a cohort of 79 BRAF/NRAS double wild type cutaneous melanoma and 17 mucosal melanoma KIT mutation was assessed by Sanger sequencing of exons 9,11,13,17 and 18. 31848942 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 GeneticVariation disease BEFREE Our findings thus show a new pathway involved in NRAS-mutant melanoma resistance and provide new opportunities for novel therapeutic options. 31549767 2020
Entrez Id: 4893
Gene Symbol: NRAS
NRAS
0.700 GeneticVariation disease BEFREE Our study aims to evaluate and review other studies that present the frequency of mutations of BRAF, NRAS, and KIT genes for different populations, and analyse correlation to their clinical-pathological characteristics and to the demographics of melanoma. 31274706 2020
Entrez Id: 1019
Gene Symbol: CDK4
CDK4
0.700 Biomarker disease BEFREE Compared with having a truncal melanoma, CDK4 (vs. noncarriers: lower extremities OR = 14.5, 95% confidence interval [CI] = 5.02-42.0, P < 0.001; upper extremities OR = 6.88, 95% CI = 2.37-19.9, P < 0.001; head and neck OR = 18.6, 95% CI = 4.04-85.2, P < 0.001) and CDKN2A (vs. noncarriers: lower extremities OR = 3.01, 95% CI = 1.56-5.82, P < 0.05; upper extremities OR = 1.91, 95% CI = 1.03-3.52, P < 0.05; head and neck OR = 5.40, 95% CI = 2.10-13.9, P < 0.001) carriers had higher odds of developing melanoma at all other sites. 31326397 2020
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.700 Biomarker disease BEFREE In this study, we used wild-type (A375) and mutant p53 (MeWo) melanoma cell lines to assess the regulation of the mitochondrial antioxidant manganese superoxide dismutase (MnSOD) by mutant p53. 31812668 2020
Entrez Id: 4157
Gene Symbol: MC1R
MC1R
0.500 GeneticVariation disease BEFREE Homozygous loss of function of the melanocortin 1 receptor (MC1R) is associated with a pheomelanotic pigment phenotype and increased melanoma risk. 31398282 2020
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.500 GeneticVariation disease BEFREE The relatively high KIT mutation rate in cutaneous melanoma in this central-European cohort justifies regular testing of this molecular target in this entity, not only in mucosal variants. 31848942 2020
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.500 GeneticVariation disease BEFREE In contrast, SF3B1 and KIT have higher mutation rate in mucosal melanoma as compared to cutaneous melanoma. 31655118 2020
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.500 AlteredExpression disease BEFREE Our study concluded that miR-140-5p hindered cell proliferation, invasion, and tumorigenesis by targeting SOX4 via inactivation of the Wnt/β-catenin and NF-κB signaling pathways in malignant melanoma, which provides an underlying molecular mechanism for the treatment for melanoma with miRNAs. 31385607 2020
Entrez Id: 4157
Gene Symbol: MC1R
MC1R
0.500 Biomarker disease BEFREE We examined known sex-related prognosis factors as they relate to features of melanoma and evaluated the sex-specific role of MC1R in overall and melanoma-specific survival. 31016712 2020
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.500 Biomarker disease BEFREE Our study aims to evaluate and review other studies that present the frequency of mutations of BRAF, NRAS, and KIT genes for different populations, and analyse correlation to their clinical-pathological characteristics and to the demographics of melanoma. 31274706 2020
Entrez Id: 207
Gene Symbol: AKT1
AKT1
0.500 Biomarker disease BEFREE MCM7 might mediate the AKT1/mTOR signaling pathway to influence the progress of melanoma. 31535400 2020
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.500 GeneticVariation disease BEFREE Finally, activating KIT mutations are rarely found to cause melanomas and may provide an actionable target for therapy. 31753111 2020
Entrez Id: 4193
Gene Symbol: MDM2
MDM2
0.500 Biomarker disease BEFREE The performance of the proposed methodology is investigated by applying a state-feedback controller to two GRN models: a melanoma WNT5A Boolean network and a p53-MDM2 negative feedback loop Boolean network, when the cost of the undesirable states, and thus the identity of the undesirable genes, is learned using the proposed methodology. 29993697 2020
Entrez Id: 5133
Gene Symbol: PDCD1
PDCD1
0.400 Biomarker disease BEFREE Since 2014, programmed cell death protein 1 (PD-1)/programmed cell death ligand 1 (PD-L1) checkpoint inhibitors have been approved by various regulatory agencies for the treatment of multiple cancers including melanoma, lung cancer, urothelial carcinoma, renal cell carcinoma, head and neck cancer, classical Hodgkin lymphoma, colorectal cancer, gastroesophageal cancer, hepatocellular cancer, and other solid tumors. 31584451 2020